Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015930078.1_cds_XP_016477231.1_68980
CDS Infomation

[gene=LOC107798716] [db_xref=GeneID:107798716] [protein=RNA-dependent RNA polymerase 6] [protein_id=XP_016477231.1] [location=join(67528..70245,70878..71753)] [gbkey=CDS]
Sequence

ATGGGATCAGAGGGCTCTGAAAAGGATCTCGTAGTGACTCAAATTAGTGTTGGTGGGTTT
GACAATGATGTCAATGCGAAAATGCTTTCAGAATATCTGGAAGAACAAGTTGGACAAGTA
TGGAGATGTAGATTAAAGATTTCAGCCACCCCTCCTGACTCTTACCCAACTTATGACATT
GATGCAGAGAGGGTGCATAGAATGAAAGATTACGAAAAAGTGGTACCTCATGCATTCGTT
CATTTTGCATCTTCAGAGTCCGCAAAGCATGCTCTGGCTGCTGCTGGGGGTAATGAGCTC
ATATTAGGAAAGAAGCCTTTGATTGTTAGTTTGGGACCTGAGAATCCCTATCGTCTGAAT
CAGCGGAGAAGAACTACCATGCCCTTTAGATTTTCAGATGTTAGTGTAGAGTTGGGAGTA
CTGGTTAGTAAAGATGACTTTGTGGTTGGTTGGAGGGGACCTCGCACTGGTGTTGACTTT
TTTGTGGACCCATTCAACGGGGCATGCAGAATACTTTTCACAAAGGATACTGCTTTCTCT
TTCAGGGGTGAAGCCAGACATGCCATTATAAAATGCAATTTCAAGATTGAGTTTATGGTA
AGGGAAATCAATGAGATAAAGAAATGTAAAGACTTTACGTCTTTGGTAATACTGTTGCAG
TTGGCTTCATCTCCATTGGTTTTCTATAGAACTGCTGATGATGATATTGAAGAATCAGTT
GCATTTGACTTGTTAGACGATGATGATCAATGGATCCGTACCACAGACATTACAGGTAGT
GGAGCCATTGGTAGGTGTAATACCTACCGTATTTCAATTCGACCTCGCAATGGTCCTAGC
TTTGAGAAGGCCATGGCATATTTCAGTTTTCGTAGGGTTCCCATGGTAGAAATGTGTAAC
CGGAAGATGCTCCGGGTGAGGGACGAGCCTGATTTTGGGGTGTCCATGTCAGATCCTTTC
TTCTGCTTCCAAAATGAAGGTATAAGCTTTAAGGTCATGTTTCTGGTGAATGCGGTTTTG
CACAAAGGCATAGTTAATCAGCATCAAATGACTAATGAATTCTTTTACTTACTTAGAAGT
CGTCAGGAGGAGGTTAATTTAGCTGCACTGAAGCACATGTTTTCTTACAAATGGCCTGTC
AATGATGCTATTCAGAAGTTAGTAGGCATCCAGAAATGGCTGTTGAAAAACCCTAAACTT
CTCGAGAGAACTGGAGAGTTGGATGATATTGTAGAGGTTAGGAGATTGGTTATCACCCCA
ACCAAAGCATACTGTCTTCCACCGACTGTGGAGCTTTCCAACAGAGTCCTCAGGAATTAT
AAACATGTTGCAGATCGATTTTTGCGAGTTACATTCATGGACGAGGGCATGCGGAACTTG
AATAGGAATGTGCTGACATACTATGCTGCTACCATTGTGAGGGAAATCACATCAAATTCG
AATCCCCAGAGAACTGCAATCTTCCAAAGGGTGAAAAGTATTCTGAGTAAAGGATTTCAT
TTGTGTGGTCGAAAGTACTCCTTTTTGGCATTCTCAGCTAACCAGCTGAGGGATCGTTCT
GCCTGGTTTTTTGCAGAAGACCCTAAAATTAGGGTACCCGGCATCATAAGCTGGATGGGG
AGGTTCAGTAACAGGAATGTCGCCAAATGTGCAGCTAGGATGGGACAGTGCTTTTCATCA
ACTTATGCAACAGTGGAAGTCCCTTCAAGGGAGGTTAACTCAGAGCTTCCAGATATTGAA
AGAAATGGGTATGTTTTCTCTGATGGAATCGGCATGATATCAGCAGATCTAGCTATAGAA
GTTGCAGAGAAGCTGCATTTAAGTGTCAACCCTCCTTCTGCTTATCAGATAAGGTATGCT
GGTTGTAAAGGTGTTGTTGCTTGTTGGCCGACAAAGAATGATGGCATCCGCCTTTCTCTG
AGGCCAAGTATGAAGAAATTCGACTCAAATCACACTATCCTTGAAATATGCTCTTGGACG
AGATTTCAACCTGGTTTCCTGAACCGGCAAATAGTAACCCTGCTCTCTTCCTTGGACGTT
AAAGATGGAATATTCTGGGAAATGCAAAAAGAAATGATATCAGGGTTGGATAAAATGCTC
GTGGATTCGGACGTGGCTTTTGATGTCATCACAGCTTCATGTGCTGAGGCAGGAAATACT
GCAGCTCTAATGTTGAGTGCAGGTTTTAAACCTCAAAGTGAGCCTCATTTAAGAGGGATG
CTCTCTAGCATAAGAGCTTCTCAGCTTGGGGACCTCAGGAATAAGGCAAGGATATTTGTT
CCTTCGGGAAGGTGGTTGATGGGCTGTTTGGATGAATTAGGTGAGCTTGAGCAAGGCCAA
TGCTTTATTCAAGTGTCAAGCCCTTCTTTGGAGAATTGTTTTATTAAGCATGGTCCGAAA
TTTTCTGATATAAAGCAAAATCTTCAAGTAGTAAAGGGCCTTGTTGTAATTGCAAAGAAC
CCGTGTCTTCATCCTGGGGATGTGAGGATTCTGGAGGCTGTAGATGTTCCTGGTTTACAC
CATCTCTATGATTGTCTGGTCTTTCCTCAGAAGGGGGATAGGCCACATTCAAATGAAGCA
TCAGGAAGTGACCTGGATGGTGACCTCTACTTTGTGACTTGGGATGAAAATCTCATCCCA
CCCAGTAAGAAAAGCTGGATCCCGATGAACTATGAACCTGCGGAAGTCAAACAGTTGGGT
CGTCAAGTTAATCATATGGACATAATAGATTTTTTTTCAAAAAACATGGTCCAAGAGAGT
CTAGGAGAAATCTGCAACGCACATGTGGTTCATGCTGACCTCAGTGAATTTGGAGCTTTG
GATGAGAAGTGCCTAAAATTGGCAGAGCTTGCTGCTCTAGCCGTTGACTTCCCCAAAACT
GGAAAACTTGTGACCATGCCGTTTGACCTCAAACCAAAAATGTATCCCGACTTCATGGGG
AAAGAGGAATTCCAATCATACAAGTCAAAGAAAATTTTGGGCAAATTGTATAGGCAAGTG
AAAGATGTATGTGATACAGAGGGTGAAGTATCTGCTGGACTTGAGCTTGTCCCAAACGAC
ATCCCATATGACTCTAGTCTTGAGATCCCAGGATCCACAGCTTTCATAGACGATGCATGG
AACAGCAAATGTTCTTATGATGGTCAGTTGCATGGACTTTTAGGGCAATACAAAGTTAAC
AGGGAAGAAGAGGTGGTTACTGGACATATATGGTCCATGCCGAAGTACAGTGCTAAGAAG
CAAGGGGAATTAAAAGAGAGGCTGAAGCACGCATATAATACGCTGAGGAAGGAGTTCAGG
AATGTCTTCGAGCGTATGGATCCTGATTTTGATCTTCTTCCCGATGATGAGAAGAATGAT
ATGTATGAAAGAAAGGCATCTGCATGGTATCAGGTCACCTACAATCCTCATTGGGTTGCT
AGATCACTGGAGTTGCAATTGCCAGATGCTATCTCAAGTACTGTAATGCTAAGTTTTGCA
TGGATTGCAGCAGATTACCTTGCTCGAATTAAAATTAGGCACAGGGGATTGCAGTATTCC
GACTCTACCAAGCCAATCAATTCCCTTGGAAGGTATCTTGTTGACAAAATATGA

Peptide Sequence

PEP ID

XP_016477231.1
PEP Infomation

PREDICTED: RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Sequence

MGSEGSEKDLVVTQISVGGFDNDVNAKMLSEYLEEQVGQVWRCRLKISATPPDSYPTYDI
DAERVHRMKDYEKVVPHAFVHFASSESAKHALAAAGGNELILGKKPLIVSLGPENPYRLN
QRRRTTMPFRFSDVSVELGVLVSKDDFVVGWRGPRTGVDFFVDPFNGACRILFTKDTAFS
FRGEARHAIIKCNFKIEFMVREINEIKKCKDFTSLVILLQLASSPLVFYRTADDDIEESV
AFDLLDDDDQWIRTTDITGSGAIGRCNTYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCN
RKMLRVRDEPDFGVSMSDPFFCFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRS
RQEEVNLAALKHMFSYKWPVNDAIQKLVGIQKWLLKNPKLLERTGELDDIVEVRRLVITP
TKAYCLPPTVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNS
NPQRTAIFQRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMG
RFSNRNVAKCAARMGQCFSSTYATVEVPSREVNSELPDIERNGYVFSDGIGMISADLAIE
VAEKLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWT
RFQPGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVITASCAEAGNT
AALMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQ
CFIQVSSPSLENCFIKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLH
HLYDCLVFPQKGDRPHSNEASGSDLDGDLYFVTWDENLIPPSKKSWIPMNYEPAEVKQLG
RQVNHMDIIDFFSKNMVQESLGEICNAHVVHADLSEFGALDEKCLKLAELAALAVDFPKT
GKLVTMPFDLKPKMYPDFMGKEEFQSYKSKKILGKLYRQVKDVCDTEGEVSAGLELVPND
IPYDSSLEIPGSTAFIDDAWNSKCSYDGQLHGLLGQYKVNREEEVVTGHIWSMPKYSAKK
QGELKERLKHAYNTLRKEFRNVFERMDPDFDLLPDDEKNDMYERKASAWYQVTYNPHWVA
RSLELQLPDAISSTVMLSFAWIAADYLARIKIRHRGLQYSDSTKPINSLGRYLVDKI

Transcript Sequence

Gene sequence data has not been registered.